affycoretools - Functions useful for those doing repetitive analyses with Affymetrix GeneChips
Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.
Last updated 4 months ago
reportwritingmicroarrayonechannelgeneexpression
4.32 score 196 dependencies 1 dependentsmakecdfenv - CDF Environment Maker
This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.
Last updated 4 months ago
onechanneldataimportpreprocessing
2.60 score 7 dependencies 2 dependentsclusterStab - Compute cluster stability scores for microarray data
This package can be used to estimate the number of clusters in a set of microarray data, as well as test the stability of these clusters.
Last updated 4 months ago
clustering
1.31 score 2 dependenciescopa - Functions to perform cancer outlier profile analysis.
COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.
Last updated 4 months ago
onechanneltwochanneldifferentialexpressionvisualization
0.82 score 2 dependencies